JGI home site
Assemblies
Organism Assembly or GenBank Acceptance Date Accession Number Size (Mb) Contigs Status Funding Year
Acidimicrobium ferrooxidans DSM 10331 2.2 10 Draft 2007
Acidiphilium cryptum JF-5 5/11/07

CP000697 Chrom

CP000689 Plasmid pACRY01
CP000690 Plasmid pACRY02

CP000691 Plasmid pACRY03
CP000692 Plasmid pACRY04

CP000693 Plasmid pACRY05
CP000694 Plasmid pACRY06

CP000695 Plasmid pACRY07
CP000696 Plasmid pACRY08

 4.0 9 Finished 2005
Acidithiobacillus ferrooxidans ATCC 53993 9/8/08 CP001132 2.9 1 Finished 2006
Acidothermus cellulolyticus 11B 11/9/06 CP000481 2.4 1 Finished 2005
Acidobacteria bacterium Ellin345 1/9/06 CP000360 5.7 1 Finished 2005
Acidothermus cellulolyticus 11B 11/9/06 CP000481 2.4 1 Finished 2005
Acidovorax avenae subsp. citrulli AAC00-1 1/4/07 CP000512 5.4 1 Finished 2006
Acidovorax sp. JS42 1/4/07

CP000539 Chrom

CP000540 Plasmid pAOVO01
CP000541 Plasmid pAOVO02

 4.6 3 Finished 2006
Actinobacillus succinogenes 130Z 7/5/07 CP000746 2.3 1 Finished 2005
Actinosynnema mirum DSM 43827 8.1 100 Draft 2007
Alkalilimnicola ehrlichei MLHE-1 9/12/06 CP000453 3.3 1 Finished 2005
Akkermansia muciniphila ATCC BAA-835 5/5/08 CP001071 2.7 1 Finished 2006
Alkaliphilus metalliredigens QYMF 6/28/07 CP000724 4.9 1 Finished 2004
Alicyclobacillus acidocaldarius DSM 446 3.1 49 Draft 2007
Alkaliphilus oremlandii OhILAs 10/11/07 CP000853 3.1 1 Finished 2005
Anabaena variabilis ATCC 29413 1/19/05 CP000117 Chrom
CP000118 Incision Element
CP000119 Plasmid A
CP000120 Plasmid B
CP000121 Plasmid C
 7.1 5 Finished 2003
Anaerocellum thermophilum DSM 6725 4/23/08 ABYZ00000000 2.9 39 Draft 2008
Anaerococcus prevotii DSM 20548 2.0 20 Draft 2007
Anaeromyxobacter dehalogenans 2CP-1 7/20/07 ABKC00000000 5.0 75 Draft 2004
Anaeromyxobacter dehalogenans 2CP-C 1/27/06 CP000251 5.0 1 Finished 2004
Anaeromyxobacter sp. Fw109-5 2CP-C 7/17/07 CP000769 5.3 1 Finished 2006
Anaeromyxobacter sp. K 8/15/08 CP001131 5.1 1 Finished 2006
Arthrobacter chlorophenolicus A6 7/6/07 ABKU00000000 4.7 276 Draft 2007
Arthrobacter sp. FB24 10/24/06

CP000454 Chrom

CP000455 Plasmid 1
CP000456 Plasmid 2
CP000457 Plasmid 3

5.1 4 Finished 2004
Arthrospira maxima CS-328 3/24/08


6.0 129 Draft 2007
Atopobium parvulum DSM 20469 1.5 1 Draft 2007
Azotobacter vinelandii AvOP 2/28/03 AAAU00000000 5.3 34 Draft 2002
Bacillus anthracis Sterne 6/24/04 AE017225 5.2 1 Finished 2001
Bacillus cereus E33L 8/23/05 CP000001 5.3 1 Finished 2001
Bacillus cereus subsp. cytotoxis NVH 391-98 7/17/07

CP000764 Chrom

CP000765 Plasmid pBC9801

 4.1 2 Finished 2005
Bacillus coagulans 36D1 7/5/06 AAWV00000000 2.9 226 Draft 2006
Bacillus selenitireducens MLS10 6/26/07 ABHZ00000000 3.6 28 Draft 2005
Bacillus thuringiensis Al Hakam 11/27/06

CP000485 Chrom

CP000485 Plasmid pALH1

5.3 2 Finished 2002
Bacillus thuringiensis serovar konkukian 97-27 8/12/04 AE017355 Chrom
CP000047 Plasmid 		5.3 2 Finished 2001
Bacillus weihenstephanensis KBAB4 12/21/07

CP000903 Chrom

CP000904 Plasmid pBWB401

CP000905 Plasmid pBWB402

CP000906 Plasmid pBWB403

CP000907 Plasmid pBWB404

 5.9 5 Finished 2005
bacterium Ellin514 9/22/07 ABOX00000000 7.5 24 Draft 2006
Beijerinckia indica subsp. indica ATCC 9039 4/11/08

CP001016 Chrom

CP001017 Plasmid pBIND01

CP001018 Plasmid pBIND02

 4.4 3 Finished 2007
Beutenbergia cavernosa DSM 12333 4.7 35 Draft 2007
Bifidobacterium longum DJO10A 8/8/02(Jazz) AABM00000000 2.4 49 Draft 2002
Brachybacterium faecium DSM 4810 3.6 11 Draft 2007
Brachyspira murdochii DSM 12563 3.2 7 Draft 2007
Bradyrhizobium sp. BTAi1 5/11/07

CP000494 Chrom

CP000495 Plasmid pBBta01

8.5 2 Finished 2005
Brevibacterium linens BL2 9/9/02(Jazz) AAGP00000000 4.5 25 Draft 2002
Brucella canis ATCC 23365 10/16/07 CP000872 Chrom 1
CP000873 Chrom 2
 3.3 2 Finished 2005
Brucella suis ATCC 23365 12/6/07 CP000911 Chrom 1
CP000912 Chrom 2
 3.3 2 Finished 2005
Burkholderia ambifaria IOP40-10 8/31/07 ABLC00000000 7.7 629 Permanent Draft 2007
Burkholderia ambifaria MC40-6 4/3/08

CP001025 Chrom 1

CP001026 Chrom 2
CP001027 Chrom 3
CP001028 Plasmid pBMC401

 7.6 4 Finished 2006
Burkholderia ambifaria MEX-5 8/31/07 ABLK00000000 7.9 706 Draft 2007
Burkholderia cepacia AMMD 9/21/06

CP000440 Chrom 1

CP000441 Chrom 2

CP000442 Chrom 3

CP000443 Plasmid

7.5 4 Finished 2005
Burkholderia cenocepacia AU 1054 2/2/06

CP000378 Chrom 1

CP000379 Chrom 2
CP000380 Chrom 3

7.3 3 Finished 2004
Burkholderia cenocepacia HI2424 10/25/06

CP000458 Chrom 1

CP000459 Chrom 2
CP000460 Chrom 3

CP000461 Plasmid

7.7 4 Finished 2004
Burkholderia cenocepacia MC0-3 3/13/08

CP000958 Chrom 1
CP000959 Chrom 2
CP000960 Chrom 3

 8.0 3 Finished 2006
Burkholderia graminis C4D1M 8/20/07 ABLD00000000 7.5 70 Draft 2007
Burkholderia multivorans ATCC 17616 11/15/07

CP000868 Chrom 1

CP000869 Chrom 2

CP000870 Chrom 3

CP000871 Plasmid pBMUL01

7.0 4 Finished 2006
Burkholderia phymatum STM815 4/22/08

CP001043 Chrom 1

CP001044 Chrom 2
CP001045 Plasmid pBPHY01

CP001046 Plasmid pBPHY02

 8.7 4 Finished 2006
Burkholderia phytofirmans PsJN 5/7/08

CP001052 Chrom 1
CP001053 Chrom 2
CP001054 Plasmid pBPHYT01

 8.2 3 Finished 2006
Burkholderia sp. 383 6/8/05 CP000151 Chrom 1
CP000152 Chrom 2
CP000150 Chrom 3
 8.7 3 Finished 2003
Burkholderia vietnamiensis G4 3/26/07

CP000614 Chrom 1

CP000615 Chrom 2

CP000616 Chrom 3

CP000617 Plasmid 1 pBVIE01
CP000618 Plasmid 2 pBVIE02
CP000619 Plasmid 3 pBVIE03

CP000620 Plasmid 4 pBVIE04
CP000621 Plasmid 5 pBVIE05

 8.4 8 Finished 2003
Burkholderia xenovorans LB400 11/3/05 CP000270 Chrom 1
CP000271 Chrom 2
CP000272 Chrom 3
9.7 3 Finished 2001
Caldicellulosiruptor saccharolyticus DSM 8903 4/19/07 CP000679 3.0 1 Finished 2005
Caldivirga maquilingensis IC-167 10/5/07 CP000852 2.1 1 Finished 2006
Candidatus Amoebophilus asiaticus 5a2 6/9/08 CP001102 1.9 1 Finished 2007
Candidatus Desulforudis audaxviator MP104C 3/6/08 CP000860 2.3 1 Finished 2005
Candidatus Korarchaeum cryptofilum OPF8 3/18/08 CP000968 1.6 1 Finished 2006
Candidatus Methanoregula boonei 6A8 7/26/07 CP000780 2.5 1 Finished 2006
Candidatus Methanosphaerula palustris E1-9c 4/23/08 ABZB00000000 2.9 7 Draft 2007
Candidatus Ruthia magnifica Cm 12/1/06 CP000488 1.2 1 Finished 2005
Capnocytophaga ochracea DSM 7271 2.6 15 Draft 2007
Catenulispora acidiphila DSM 44928 10.4 131 Draft 2007
Caulobacter sp. K31 2/7/08 CP000927 Chrom
CP000928 Plasmid pCAUL01
CP000929 Plasmid pCAUL02		 5.9 3 Finished 2006
Cellulomonas flavigena DSM 20109 4.0 237 Draft 2007
Chitinophaga pinensis DSM 2588 9.1 21 Draft 2007
Chlorobaculum parvum NCIB 8327 6/27/08 CP001099 2.3 1 Finished 2004
Chlorobium chlorochromatii CaD3 8/12/04 CP000108 2.5 1 Finished 2003
Chlorobium ferrooxidans DSM 13031 11/2/04 AASE00000000 2.5 47 Draft 2004
Chlorobium limicola DSM 245 6/4/08 CP001097 2.8 1 Finished 2004
Chlorobium luteolum DSM 273 11/23/04 CP000096 2.4 1 Finished 2004
Chlorobium phaeobacteroides BS1 6/9/08 CP001101 2.7 1 Finished 2004
Chlorobium phaeobacteroides DSM 266 12/11/06 CP000492 3.1 1 Finished 2004
Chlorobium phaeovibrioides DSM 265 4/12/07 CP000607 2.0 1 Finished 2004
Chloroflexus aggregans DSM 9485 4/12/06 AAUI00000000 4.6 109 Draft 2005
Chloroflexus aurantiacus J-10-fl 12/20/07 CP000909 5.3 1 Finished 2001
Chloroflexus sp. Y-400-fl 10/29/07 ABPG00000000 5.2 21 Draft 2005
Chloroherpeton thalassium ATCC 35110 6/27/08 CP001100 3.3 1 Finished 2004
Chromohalobacter salexigens DSM 3043 11/8/05 CP000285 3.7 1 Finished 2004
Chthoniobacter flavus Ellin428 1/23/08 ABVL00000000 7.9 62 Draft 2006
Clostridium beijerincki NCIMB 8052 6/27/07 CP000721 6.0 1 Finished 2004
Clostridium cellulolyticum H10 7/19/06

AAVC00000000


 4.0 121 Draft 2006
Clostridium thermocellum ATCC 27405 2/14/07 CP000568 3.8 1 Finished 2002
Clostridium thermocellum DSM 4150 1/11/08 ABVG00000000 3.3 130 Draft 2007
Clostridium phytofermentans ISDg 11/19/07 CP000885 4.8 1 Finished 2004
Comamonas testosteroni KF-1 7/17/06 AAUJ00000000 5.9 26 Draft 2006
Conexibacter woesei DSM 14684 6.4 127 Draft 2007
Crocosphaera watsonii WH 8501 1/30/04 AADV00000000 6.2 315 Draft 2003
Cryptobacterium curtum DSM 15641 1.6 3 Draft 2007
Cupriavidus metallidurans CH34 5/1/06

CP000352 Chrom
CP000353 Megaplasmid
CP000354 Plasmid pMOL30

CP000355 Plasmid pMOL28

 6.9 4 Finished 2001
Cyanothece sp. PCC 7424 7/2/07 ABOY00000000 6.4 118 Draft 2007
Cyanothece sp. PCC 7425 1/15/08 ABVJ00000000 5.8 46 Draft 2007
Cyanothece sp. PCC 7822 1/23/08 ABVE00000000 7.8 44 Draft 2007
Cyanothece sp. PCC 8801 8/17/07 ABLR00000000 4.6 29 Draft 2007
Cyanothece sp. PCC 8802 1/15/08 ABVI00000000 4.8 27 Draft 2007
Cytophaga hutchinsonii ATCC 33406 2/23/04 CP000383 4.4 1 Finished 2001
Dechloromonas aromatica RCB 3/17/05 CP000089 4.5 1 Finished 2002
Dehalococcoides sp. BAV1 5/7/07 CP000688 1.3 1 Finished 2005
Dehalococcoides sp. VS 2/19/07 ABFQ00000000 2.3 227 PermanentDraft 2005
Deinococcus geothermalis DSM 11300 2/23/06 CP000359 - Chrom
CP000358 - Plasmid pDGEO01
CP000856 - Plasmid pDGEO02
 3.0 3 Finished 2004
Delftia acidovorans SPH-1 11/16/07 CP000884 6.8 1 Finished 2006
Denitrovibrio acetiphilus DSM 12809 3.2 45 Draft 2007
Desulfatibacillum alkenivorans AK-01 4/26/07 ABII0000000 6.5 52 Draft 2005
Desulfitobacterium halfniense DCB-2 6/19/06 AAAW00000000 5.3 7 PermanentDraft 2001
Desulfococcus oleovorans Hxd3 10/19/07 CP000859 3.9 1 Finished 2006
Desulfohalobium retbaense DSM 5692 2.9 32 Draft 2007
Desulfomicrobium baculatum DSM 4028 3.9 13 Draft 2007
Desulfotomaculum acetoxidans DSM 771 4.3 186 Draft 2007
Desulfotomaculum reducens MI-1 3/23/07 CP000612 3.6 1 Finished 2005
Desulfovibrio desulfuricans G20 11/19/04 CP000112 3.7 1 Finished 2002
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 4/30/08   2.9 10 Draft 2007
Desulfovibrio salexigens DSM 2638 5/6/08   4.3 20 Draft 2007
Desulfovibrio vulgaris subsp. vulgaris DP4 1/3/07

CP000527 - Chrom

CP000528 - Plasmid pDVUL01

3.7 2 Finished 2005
Desulfuromonas acetoxidans DSM 684 2/1/06 AAEW00000000 3.8 51 PermanentDraft 2002
Dethiosulfovibrio peptidovorans DSM 11002 2.5 29 Draft 2007
Dictyoglomus turgidum DSM 6724 4/1/08 ABYR00000000 1.9 6 Draft 2005
Dinoroseobacter shibae DFL 12 10/5/07

CP000830 - Chrom

CP000831 - Plasmid pDSHI01

CP000832 - Plasmid pDSHI02

CP000833 - Plasmid pDSHI03

CP000834 - Plasmid pDSHI04

CP000835 - Plasmid pDSHI05

 4.4 6 Finished 2006
Dyadobacter fermentans DSM 18053 6.9 40 Draft 2007
Eggerthella lenta VPI 0255, DSM 2243 3.6 15 Draft 2007
Ehrlichia canis Jake 11/8/04 CP000107 1.3 1 Finished 2002
Ehrlichia chaffeensis Sapulpa 12/17/04 AAIF00000000 1.0 124 Draft 2002
Elusimicrobium minutum Pei191 4/30/08 CP001055 1.6 1 Finished 2007
Enterobacter sp. 638 4/18/07

CP000653 - Chrom

CP000654 - Plasmid pENTE01

4.7 2 Finished 2006
Enterococcus faecium DO 4/6/04 AAAK00000000 2.8 163 Draft 2000
Escherichia coli C str. ATCC 8739 3/11/08 CP000946 4.7 1 Finished 2006
Exiguobacterium sibiricum 255-15 4/3/08 CP001022 - Chrom
CP001023 - Plasmid pEXIG01
CP001024 - Plasmid pEXIG02
 3.0 3 Finished 2002
Exiguobacterium sp. AT1b 10/31/07 ABPF00000000 2.9 73 Draft 2007
Ferroplasma acidarmanus fer1 11/9/03 AABC00000000 1.8 56 Draft 2001
Fervidobacterium nodosum Rt17-B1 7/30/07 CP000771 1.9 1 Finished 2006
Flavobacterium johnsoniae UW101 5/1/07 CP000685 6.1 1 Finished 2005
Francisella philomiragia subsp. philomiragia ATCC 25017 2/11/8 CP000937- Chrom

CP000938 - Plasmid pFPHI01

2.0 2 Finished 2003
Frankia sp. CcI3 2/2/06 CP000249 5.4 1 Finished 2004
Frankia sp. EAN1pec 10/10/07 CP000820 9.0 1 Finished 2004
Geobacillus sp. G11MC16 1/15/08 ABVH00000000 3.6 31 Draft 2007
Geobacillus sp. WCH70 9/20/07 ABLJ00000000 3.3 76 Draft 2007
Geobacillus sp. Y412MC10 11/12/07 ABRG00000000 7.2 33 Draft 2007
Geobacter bemidjiensis Bem 8/19/08 CP001124 4.6 1 Finished 2005
Geobacter lovleyi SZ 6/5/08 CP001089 Chrom
CP001090 Plasmid pGLOV01		 4.0 2 Finished 2006
Geobacter metallireducens GS-15 7/13/05 CP000148 - Chrom
CP000149 - Plasmid 		4.0 2 Finished 2002
Geobacter uraniireducens RF4 5/11/07 CP000698 5.1 1 Finished 2005
Geobacter sp. FRC-32 12/5/05 AASH00000000 4.0 164 Draft 2005
Geobacter sp. M21 9/10/07 ABRF00000000 4.7 38 Draft 2007
Geodermatophilus obscurus DSM 43160 5.3 39 Draft 2007
Gluconacetobacter diazotrophicus PAl 5 10/16/08 CP001189
CP001190
 3.9 2 Finished 2007
Gordonia bronchialis DSM 43247 5.3 39 Draft 2007
Haemophilus somnus 129PT 11/8/04 CP000019 2.0 1 Finished 2002
Haemophilus somnus 2336 2/26/08 CP000947 2.3 1 Finished 2002
Haliangium ochraceum DSM 14365 9.4 45 Draft 2007
Halogeometricum borinquense DSM 11551 3.9 57 Draft 2007
Halomicrobium mukohataei DSM 12286 3.3 2 Draft 2007
Halorhabdus utahensis DSM 12940 3.1 5 Draft 2007
Halorhodospira halophila SL1 1/10/07 CP000544 2.7 1 Finished 2005
Halorubrum lacusprofundi ATCC 49239 12/1/06 ABEB00000000 2.8 15 Draft 2006
Halothermothrix orenii H 168 8/2/05 AAOZ00000000 2.5 72 Draft 2005
Herpetosiphon aurantiacus ATCC 23779 11/13/07

CP000875
CP000876 Plasmid pHAU01

CP000877 Plasmid pHAU02

 6.8 3 Finished 2005
Hydrogenobaculum sp. Y04AAS1 8/8/08 CP001130 1.559516 1 Finished 2005
Ignicoccus hospitalis KIN4/I 8/29/07 CP000816 1.3 1 Finished 2005
Jannaschia sp. CCS1 2/7/06

CP000264 Chrom

CP000265 Plasmid

4.4 2 Finished 2004
Jonesia denitrificans DSM 20603 2.7 90 Draft 2007
Kangiella koreensis DSM 16069 2.8 11 Draft 2007
Kineococcus radiotolerans SRS30216 7/10/07

CP000750 Chrom

CP000751 Plasmid pKRAD01

CP000752 Plasmid pKRAD02

 5.0 3 Finished 2003
Kribbella flavida DSM 17836 7.6 33 Draft 2007
Kytococcus sedentarius DSM 20547 2.8 44 Draft 2007
Lactobacillus brevis ATCC 367 10/13/06 CP000416 Chrom
CP000417 Plasmid 1
CP000418 Plasmid 2
 2.3 3 Finished 2002
Lactobacillus casei ATCC 334 10/13/06

CP000423 Chrom

CP000424 Plasmid

 2.9 2Finished 2002
Lactobacillus delbrueckii ATCC BAA-365 10/13/06 CP000412 1.9 1 Finished 2002
Lactobacillus gasseri ATCC 33323 10/13/06 CP000413 1.9 1 Finished 2002
Lactobacillus reuteri F275 6/1/07 CP000705 2.0 1 Finished 2005
Lactobacillus reuteri 100-23 9/21/05 AAPZ02000000 2.2 103 Draft 2005
Lactococcus lactis subsp. cremoris SK11 10/13/06

CP000425 Chrom

CP000426 Plasmid 1

CP000427 Plasmid 2

CP000428 Plasmid 3

CP000429 Plasmid 4

CP000430 Plasmid 5

 2.6 6 Finished 2002
Leptothrix cholodnii SP-6 3/25/08

CP001013

 4.9 1 Finished 2007
Leptotrichia buccalis DSM 1135 2.5 46 Draft 2007
Leuconostoc mesenteroides ATCC 8293 10/13/06

CP000414 Chrom

CP000415 Plasmid

2.1 2 Finished 2002
Magnetococcus sp. MC-1 11/8/06 CP000471 4.7 1 Finished 2001
Magnetospirillum magnetotacticum MS-1 1/16/01 AAAP00000000 9.2 555 Draft 2001
Maricaulis maris MCS10 9/14/06 CP000449 3.4 1 Finished 2006
Marinobacter aquaeolei VT8 12/28/06

CP000514 Chrom

CP000515 pMAQU01

CP000516 pMAQU02

 4.8 3 Finished 2005
Marinomonas sp. MWYL1 7/5/07 CP000749 5.1 1 Finished 2006
Meiothermus ruber DSM 1279 3.1 6 Draft 2007
Meiothermus silvanus DSM 9946 3.7 30 Draft 2007
Mesorhizobium sp. BNC1 1/20/06

CP000390 Chrom

CP000389 Plasmid 1

CP000391 Plasmid 2

CP000392 Plasmid 3

4.9 4 Finished 2002
Metallosphaera sedula DSM 5348 4/25/07 CP000682 2.2 1 Finished 2006
Methanococcoides burtonii DSM 6242 1/9/06 CP000300 2.6 1 Finished 2002
Methanococcus aeolicus Nankai-3 6/29/07 CP000743 1.6 1 Finished 2006
Methanococcus maripaludis C5 3/15/07

CP000609 Chrom

CP000610 Plasmid

1.8 2 Finished 2006
Methanococcus maripaludis C6 11/13/07

CP000867

 1.7 1 Finished 2006
Methanococcus maripaludis C7 6/29/07 CP000745 1.8 1 Finished 2006
Methanococcus vannielii SB C5 6/29/07 CP000742 1.7 1 Finished 2006
Methanococcus voltae A3 7/24/07 ABHB00000000 1.9 5 Draft 2006
Methanocorpusculum labreanum Z 2/1/07 CP000559 1.8 1 Finished 2006
Methanoculleus marisnigri JR1 2/16/07 CP000562 2.5 1 Finished 2006
Methanosaeta thermophila PT 10/25/06 CP000477 1.9 1 Finished 2005
Methanosarcina barkerii fusaro 6/23/05 CP000099 Chrom
CP000098 Plasmid		 4.9 2 Finished 2001
Methanospirillum hungatei JF-1 2/7/06 CP000254 3.5 1 Finished 2004